MA_3437g0010

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_3437g0010

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00109790	PGP11,...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT1G28010	ABCB14, ATABCB14, PGP14	P-glycoprotein 14	0.03	OrthoFinder output from all 47 species
AT2G47000	ATPGP4, PGP4, ABCB4, MDR4	ATP binding cassette subfamily B4	0.04	OrthoFinder output from all 47 species
AT4G18050	PGP9	P-glycoprotein 9	0.02	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g18811	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g51317	ABCB19,...	ABC-B-type transporter *(AMN3) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g37349	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g42964	PGP11	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene35821.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62053.t1	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0039.g026389	PGP11	subfamily ABCB transporter & original description: CDS=323-4378	0.03	OrthoFinder output from all 47 species
Cba_g17575	PGP6	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000293.10	PGP11	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Dac_g46173	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g05841	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g22982	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01007586001	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Gb_01718	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_02468	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_07563	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_08702	No alias	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Gb_32125	PGP11	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_33057	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_33058	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_36862	PGP21	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g34970.1	PGP11, LOC_Os01g34970	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g50160.1	PGP11, LOC_Os01g50160	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Len_g12070	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_636449g0010	No alias	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
MA_82945g0030	PGP17	ABC transporter B family member 17 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
MA_9253g0010	No alias	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Msp_g44397	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g18266	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g29613	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g30543	PGP18	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04029	PGP11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g65660	ABCB19,...	subfamily ABCB transporter & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g13619	No alias	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g29797	PGP6	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010416	ABCB19,...	subfamily ABCB transporter & original description: CDS=327-1289	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291	PGP2	subfamily ABCB transporter & original description: CDS=1-4248	0.03	OrthoFinder output from all 47 species
Smo148837	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Smo92485	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Solyc06g009290.4.1	PGP21, Solyc06g009290	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc12g098840.3.1	PGP11, Solyc12g098840	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Spa_g18839	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26470	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08424	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21567	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g38947	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g41430	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e020070_P001	ATPGP4, PGP4,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	403	551
IPR003439	ABC_transporter-like_ATP-bd	1034	1182
IPR011527	ABC1_TM_dom	699	962
IPR011527	ABC1_TM_dom	62	333

External Links

No external refs found!

MA_3437g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation