LOC_Os01g21420.1


Description : SR30/34 RNA splicing factor


Gene families : OG_01_0001375 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001375_tree ,
OG_02_0001509 (LandPlants) Phylogenetic Tree(s): OG_02_0001509_tree ,
OG_03_0001416 (SeedPlants) Phylogenetic Tree(s): OG_03_0001416_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g21420.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000857.20 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Cre06.g278239 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01031132001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Gb_24206 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida
MA_11621g0010 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida
MA_259575g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c17_17620V3.1 No alias SER/ARG-rich protein 34A 0.02 Archaeplastida
Pp3c1_35700V3.1 No alias SER/ARG-rich protein 34A 0.02 Archaeplastida
Solyc09g075090.1.1 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida
GSVIVT01031132001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 LandPlants
GSVIVT01038636001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 LandPlants
Gb_20155 No alias SR30/34 RNA splicing factor 0.02 LandPlants
MA_11621g0010 No alias SR30/34 RNA splicing factor 0.03 LandPlants
Pp3c17_17620V3.1 No alias SER/ARG-rich protein 34A 0.02 LandPlants
Pp3c1_35700V3.1 No alias SER/ARG-rich protein 34A 0.02 LandPlants
Solyc01g099810.3.1 No alias SR30/34 RNA splicing factor 0.02 LandPlants
Solyc09g075090.1.1 No alias SR30/34 RNA splicing factor 0.04 LandPlants
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 SeedPlants
GSVIVT01031132001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 SeedPlants
GSVIVT01038636001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 SeedPlants
Gb_20155 No alias SR30/34 RNA splicing factor 0.02 SeedPlants
MA_11621g0010 No alias SR30/34 RNA splicing factor 0.03 SeedPlants
MA_259575g0010 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc01g099810.3.1 No alias SR30/34 RNA splicing factor 0.02 SeedPlants
Solyc09g075090.1.1 No alias SR30/34 RNA splicing factor 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 175 237
No external refs found!