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  5. MA_276701g0010

MA_276701g0010 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_276701g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00019490 AGL16,... No description available 0.03 OrthoFinder output from all 47 species
AT1G22590 AGL87 AGAMOUS-like 87 0.03 OrthoFinder output from all 47 species
AT2G22630 AGL17 AGAMOUS-like 17 0.03 OrthoFinder output from all 47 species
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.04 OrthoFinder output from all 47 species
Adi_g061705 AGL14 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026346 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G004400.1 AGL16, Ceric.07G004400 not classified & original description: pacid=50626944... 0.04 OrthoFinder output from all 47 species
Dde_g07313 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17972 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033067001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_10289256g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_113509g0010 AGL104 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_1170g0010 AGL8, FUL no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_133455g0010 AGL6 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
MA_141872g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_254338g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_412147g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_415605g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_458668g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_57493g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.07 OrthoFinder output from all 47 species
MA_607627g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_886752g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Msp_g31320 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48804 AGL8, FUL regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 OrthoFinder output from all 47 species
Pp3c16_12230V3.1 Pp3c16_12230 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g04968 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g080785.1.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc10g017630.3.1 SOC1, AGL20,... MADS-box protein SOC1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc11g069770.2.1 AGL29, Solyc11g069770 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Tin_g11248 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000846_P003 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e012024_P001 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e023236_P005 AGL6, Zm00001e023236 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e027034_P001 PI, Zm00001e027034 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e038716_P004 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!