1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_27138g0010

MA_27138g0010


Description : RNA editing factor (MEF7)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_27138g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AT3G12770 MEF22 mitochondrial editing factor 22 0.03 OrthoFinder output from all 47 species
AT3G28640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007663 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g066095 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g099287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g57040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g73866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G009800.1 Ceric.22G009800 not classified & original description: pacid=50615356... 0.04 OrthoFinder output from all 47 species
Ceric.29G078100.1 Ceric.29G078100 not classified & original description: pacid=50625063... 0.03 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.04 OrthoFinder output from all 47 species
Ceric.37G053600.1 Ceric.37G053600 not classified & original description: pacid=50616731... 0.04 OrthoFinder output from all 47 species
Dac_g05543 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g44355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02573 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_02808 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
Gb_03512 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_03578 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_04419 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_04420 OTP86 Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_08619 No alias RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_22656 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_23085 No alias RNA editing factor (MEF19) 0.06 OrthoFinder output from all 47 species
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_33335 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_38417 CRR2 OTP70 plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
LOC_Os09g24680.1 LOC_Os09g24680 Pentatricopeptide repeat-containing protein At1g74600,... 0.04 OrthoFinder output from all 47 species
Len_g18990 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_109016g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_109016g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_115669g0020 EMB2758 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_121102g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_135424g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
MA_18277g0010 CRR22 Pentatricopeptide repeat-containing protein At4g39530... 0.07 OrthoFinder output from all 47 species
MA_25729g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_43497g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_445207g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
MA_72442g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_9354530g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37271 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020215 No alias not classified & original description: CDS=1-5316 0.04 OrthoFinder output from all 47 species
Solyc02g079260.2.1 Solyc02g079260 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Spa_g09049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
Zm00001e003284_P001 Zm00001e003284 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 251 294
IPR032867 DYW_dom 1076 1199
IPR002885 Pentatricopeptide_repeat 574 598
IPR002885 Pentatricopeptide_repeat 372 397
IPR002885 Pentatricopeptide_repeat 1043 1072
IPR002885 Pentatricopeptide_repeat 877 902
IPR002885 Pentatricopeptide_repeat 675 700
IPR002885 Pentatricopeptide_repeat 776 800
IPR002885 Pentatricopeptide_repeat 295 342
IPR002885 Pentatricopeptide_repeat 701 747
IPR002885 Pentatricopeptide_repeat 600 645
IPR002885 Pentatricopeptide_repeat 204 240
IPR002885 Pentatricopeptide_repeat 399 446
IPR002885 Pentatricopeptide_repeat 498 547
IPR002885 Pentatricopeptide_repeat 903 950
IPR002885 Pentatricopeptide_repeat 802 849
No external refs found!