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  5. MA_2159g0010

MA_2159g0010


Description : RING-H2 finger protein ATL78 OS=Arabidopsis thaliana (sp|q6nqg7|atl78_arath : 95.9)


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_2159g0010
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g34880.1 ATL43, LOC_Os06g34880 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Lfl_g04652 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_10432668g0010 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_13397g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_289646g0010 RHA3B E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_43248g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_465316g0010 ATL2, TL2 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_5170g0020 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_69343g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_71146g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7206g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_8693914g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sam_g03685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088440.2.1 Solyc01g088440 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc06g053640.1.1 Solyc06g053640 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc08g076830.1.1 Solyc08g076830 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc11g005280.1.1 Solyc11g005280 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e041385_P001 Zm00001e041385 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0006879 cellular iron ion homeostasis IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055072 iron ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 90 133
No external refs found!