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  5. LOC_Os06g46000

LOC_Os06g46000 (Os06g0671900)


Aliases : Os06g0671900

Description : 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. tubulin beta 8 (TUB8)


Gene families : OG_01_0000204 (Gene family) Phylogenetic Tree(s): OG0000204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g46000
Cluster HCCA cluster: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AT5G12250 TUB6 beta-6 tubulin 0.02 Gene family
AT5G23860 TUB8 tubulin beta 8 0.02 Gene family
AT5G62700 TUB3 tubulin beta chain 3 0.03 Gene family
Cpa|evm.model.tig00001067.14 No alias 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.01 Gene family
Cpa|evm.model.tig00001067.6 No alias 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.01 Gene family
LOC_Os03g45920 Os03g0661300 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.03 Gene family
MA_10431251g0010 No alias 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.02 Gene family
MA_230579g0020 No alias 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.02 Gene family
MA_79708g0010 No alias 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.02 Gene family
Solyc06g035970.3.1 Solyc06g035970.3 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.06 Gene family
Solyc10g080940.2.1 Solyc10g080940.2 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.03 Gene family
Solyc10g086760.2.1 Solyc10g086760.2 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.03 Gene family
Solyc12g089310.2.1 Solyc12g089310.2 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli beta... 0.02 Gene family
Zm00001d008216 No alias 31.1.1.2 cell.organisation.cytoskeleton.mikrotubuli... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 382
IPR003008 Tubulin_FtsZ_GTPase 3 211
No external refs found!