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  5. MA_211369g0010

MA_211369g0010 (LSH3)


Aliases : LSH3

Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 195.0)


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_211369g0010
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Als_g04816 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g17249 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g27588 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G086500.1 LSH4, Ceric.02G086500 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G090800.1 LSH6, Ceric.14G090800 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.18G075200.1 LSH4, Ceric.18G075200 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.22G071900.1 LSH6, Ceric.22G071900 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g15328 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g18837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44523 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g16892 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.05 OrthoFinder output from all 47 species
Gb_15426 LSH4 Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
Gb_36840 LSH4 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Len_g04629 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g05594 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g10175 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g20213 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023275 LSH4 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Solyc06g083860.2.1 LSH3, Solyc06g083860 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Solyc07g150147.1.1 LSH10, Solyc07g150147 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 OrthoFinder output from all 47 species
Solyc10g007310.1.1 LSH10, Solyc10g007310 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 OrthoFinder output from all 47 species
Spa_g07735 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Spa_g22798 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Spa_g28138 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g47479 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e012687_P001 LSH4, Zm00001e012687 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 OrthoFinder output from all 47 species
Zm00001e019403_P001 LSH6, Zm00001e019403 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 46 103
IPR006936 ALOG_dom 103 144
No external refs found!