Aliases : Os06g0667200
Description : 27.3.24 RNA.regulation of transcription.MADS box transcription factor family Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. TRANSPARENT TESTA16 (TT16)
Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR network (cutoff 100): LOC_Os06g45650 | |
Cluster | HCCA cluster: Cluster_201 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G42830 | SHP2, AGL5 | K-box region and MADS-box transcription factor family protein | 0.02 | Gene family | |
AT4G11880 | AGL14 | AGAMOUS-like 14 | 0.02 | Gene family | |
AT4G24540 | AGL24 | AGAMOUS-like 24 | 0.02 | Gene family | |
GSVIVT01003864001 | No alias | 27.3.24 RNA.regulation of transcription.MADS box... | 0.01 | Gene family | |
GSVIVT01008560001 | No alias | 27.3.24 RNA.regulation of transcription.MADS box... | 0.03 | Gene family | |
GSVIVT01010221001 | No alias | 27.3.24 RNA.regulation of transcription.MADS box... | 0.02 | Gene family | |
LOC_Os02g45770 | Os02g0682200 | 27.3.24 RNA.regulation of transcription.MADS box... | 0.02 | Gene family | |
LOC_Os03g11614 | Os03g0215400 | 33.99 development.unspecified Encodes a MADS box... | 0.02 | Gene family | |
LOC_Os04g23910 | Os04g0304400 | 27.3.24 RNA.regulation of transcription.MADS box... | 0.03 | Gene family | |
LOC_Os05g11380 | No alias | 33.99 development.unspecified Floral homeotic gene... | 0.02 | Gene family | |
LOC_Os05g11414 | Os05g0203800 | 33.99 development.unspecified Floral homeotic gene... | 0.02 | Gene family | |
LOC_Os07g41370 | Os07g0605200 | 33.99 development.unspecified MADS box gene negatively... | 0.02 | Gene family | |
LOC_Os09g02780 | Os09g0116000 | No description available | 0.03 | Gene family | |
MA_10289256g0010 | No alias | No description available | 0.02 | Gene family | |
MA_3200737g0010 | No alias | 33.99 development.unspecified Encodes a nuclear protein... | 0.02 | Gene family | |
Smo79393 | PACid_15401484 | No description available | 0.01 | Gene family | |
Smo85851 | PACid_15422940 | No description available | 0.02 | Gene family | |
Solyc05g012020.3.1 | Solyc05g012020.3 | 27.3.24 RNA.regulation of transcription.MADS box... | 0.02 | Gene family | |
Solyc06g069430.3.1 | Solyc06g069430.3 | 33.99 development.unspecified MADS box gene negatively... | 0.02 | Gene family | |
Zm00001d031620 | GRMZM2G159397 | 27.3.24 RNA.regulation of transcription.MADS box... | 0.02 | Gene family | |
Zm00001d037737 | GRMZM2G052890 | 33.99 development.unspecified Floral homeotic gene... | 0.02 | Gene family | |
Zm00001d039434 | GRMZM2G471089 | 33.99 development.unspecified Floral homeotic gene... | 0.03 | Gene family | |
Zm00001d047355 | GRMZM2G161666 | 27.3.24 RNA.regulation of transcription.MADS box... | 0.03 | Gene family | |
Zm00001d048082 | GRMZM2G102161 | 27.3.24 RNA.regulation of transcription.MADS box... | 0.03 | Gene family |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan |
CC | GO:0005634 | nucleus | IEA | InterProScan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
No external refs found! |