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  5. LOC_Os01g12930.1

LOC_Os01g12930.1


Description : ubiquitin E3 ligase (CERBERUS/LIN)


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0003337 (SeedPlants) Phylogenetic Tree(s): OG_03_0003337_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g12930.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009918001 No alias External stimuli response.biotic... 0.04 Archaeplastida
LOC_Os04g49500.1 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.01 Archaeplastida
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 Archaeplastida
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 Archaeplastida
MA_7193588g0010 No alias No annotation 0.04 Archaeplastida
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 Archaeplastida
Mp2g17510.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 Archaeplastida
AMTR_s00041p00198510 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.01 LandPlants
GSVIVT01009918001 No alias External stimuli response.biotic... 0.04 LandPlants
LOC_Os04g49500.1 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.01 LandPlants
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 LandPlants
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.03 LandPlants
MA_7193588g0010 No alias No annotation 0.03 LandPlants
Mp2g17510.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 LandPlants
Zm00001e016398_P001 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 LandPlants
GSVIVT01009918001 No alias External stimuli response.biotic... 0.02 SeedPlants
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.01 SeedPlants
MA_7193588g0010 No alias No annotation 0.02 SeedPlants
Solyc04g057940.4.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 425 495
IPR001680 WD40_repeat 1106 1132
IPR001680 WD40_repeat 1142 1176
No external refs found!