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  5. LOC_Os06g45650

LOC_Os06g45650 (Os06g0667200)


Aliases : Os06g0667200

Description : 27.3.24 RNA.regulation of transcription.MADS box transcription factor family Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. TRANSPARENT TESTA16 (TT16)


Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g45650
Cluster HCCA cluster: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.02 Gene family
AT4G11880 AGL14 AGAMOUS-like 14 0.02 Gene family
AT4G24540 AGL24 AGAMOUS-like 24 0.02 Gene family
GSVIVT01003864001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.01 Gene family
GSVIVT01008560001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
GSVIVT01010221001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
LOC_Os02g45770 Os02g0682200 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
LOC_Os03g11614 Os03g0215400 33.99 development.unspecified Encodes a MADS box... 0.02 Gene family
LOC_Os04g23910 Os04g0304400 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
LOC_Os05g11380 No alias 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os05g11414 Os05g0203800 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os07g41370 Os07g0605200 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
LOC_Os09g02780 Os09g0116000 No description available 0.03 Gene family
MA_10289256g0010 No alias No description available 0.02 Gene family
MA_3200737g0010 No alias 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
Smo79393 PACid_15401484 No description available 0.01 Gene family
Smo85851 PACid_15422940 No description available 0.02 Gene family
Solyc05g012020.3.1 Solyc05g012020.3 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Solyc06g069430.3.1 Solyc06g069430.3 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
Zm00001d031620 GRMZM2G159397 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d037737 GRMZM2G052890 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
Zm00001d039434 GRMZM2G471089 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
Zm00001d047355 GRMZM2G161666 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Zm00001d048082 GRMZM2G102161 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 84 172
No external refs found!