Aliases : PBD2
Description : Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica (sp|q9lst6|psb2_orysj : 162.0)
Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G14800 | PBD2 | 20S proteasome beta subunit D2 | 0.05 | OrthoFinder output from all 47 species | |
Ala_g09690 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.27G023100.1 | PRCGB, PBD1,... | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g04914 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g08528 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g00381 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g48930.1 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.03 | OrthoFinder output from all 47 species | |
Len_g12839 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Mp4g04320.1 | PRCGB, PBD1 | component beta type-4 of 26S proteasome | 0.03 | OrthoFinder output from all 47 species | |
Msp_g00339 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c25_9390V3.1 | PRCGB, PBD1, Pp3c25_9390 | 20S proteasome beta subunit D1 | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g082320.3.1 | PRCGB, PBD1,... | component beta type-4 of 26S proteasome | 0.06 | OrthoFinder output from all 47 species | |
Tin_g04912 | PRCGB, PBD1 | beta-type-4 component *(PBD) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004298 | threonine-type endopeptidase activity | IEA | Interproscan |
CC | GO:0005839 | proteasome core complex | IEA | Interproscan |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001353 | Proteasome_sua/b | 3 | 89 |
No external refs found! |