MA_203210g0020 (FHY2, HY8, PHYA, FRE1)

Aliases : FHY2, HY8, PHYA, FRE1

Description : Phytochrome OS=Pinus sylvestris (sp|q41046|phy_pinsy : 132.0)

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_203210g0020
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
Ala_g13454	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g26544	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g52979	FHY2, HY8, PHYA, FRE1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g059870.4.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.03	OrthoFinder output from all 47 species
Solyc07g045480.3.1	PHYC, Solyc07g045480	phytochrome photoreceptor (PHY)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013515	Phytochrome_cen-reg	7	58
IPR013767	PAS_fold	108	155

External Links

No external refs found!

MA_203210g0020 (FHY2, HY8, PHYA, FRE1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation