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  5. LOC_Os01g11900.1

LOC_Os01g11900.1


Description : methylcytosine-specific DNA glycosylase (ROS1). bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG_01_0001102 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001102_tree ,
OG_02_0001721 (LandPlants) Phylogenetic Tree(s): OG_02_0001721_tree ,
OG_03_0001624 (SeedPlants) Phylogenetic Tree(s): OG_03_0001624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g11900.1
Cluster HCCA: Cluster_368

Target Alias Description ECC score Gene Family Method Actions
AT2G36490 DML1, ROS1 demeter-like 1 0.03 Archaeplastida
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.03 Archaeplastida
GSVIVT01033777001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 Archaeplastida
GSVIVT01034713001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.05 Archaeplastida
LOC_Os02g29380.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.04 Archaeplastida
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 Archaeplastida
Pp3c2_260V3.1 No alias demeter-like 1 0.03 Archaeplastida
Zm00001e014575_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 Archaeplastida
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.03 LandPlants
GSVIVT01034713001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 LandPlants
Zm00001e014575_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 LandPlants
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.03 SeedPlants
GSVIVT01034713001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 SeedPlants
Zm00001e014575_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR028925 RRM_DME 1831 1931
IPR028924 Perm-CXXC 1797 1828
No external refs found!