MA_196108g0010 (CRB, HIP1.3, CSP41B)


Aliases : CRB, HIP1.3, CSP41B

Description : endoribonuclease (CSP41)


Gene families : OG0001864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001864_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_196108g0010
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00211760 CRB, HIP1.3,... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AMTR_s00025p00246210 CSP41A,... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AT1G09340 CRB, HIP1.3, CSP41B chloroplast RNA binding 0.07 OrthoFinder output from all 47 species
AT3G63140 CSP41A chloroplast stem-loop binding protein of 41 kDa 0.08 OrthoFinder output from all 47 species
Adi_g006651 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g020154 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g044321 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g02158 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g03824 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g04885 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12109 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12366 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g45562 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01615 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11448 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13529 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69969 CSP41A endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene42964.t1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0754.g085340 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=1-1245 0.04 OrthoFinder output from all 47 species
Azfi_s1450.g103210 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=130-1254 0.03 OrthoFinder output from all 47 species
Cba_g10854 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10933 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.11G048000.1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.26G018800.1 CSP41A, Ceric.26G018800 endoribonuclease *(CSP41) & original description:... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021720.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cre10.g440050 CSP41A RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Dac_g08562 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g14747 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02729 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02854 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g14746 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g01176 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06718 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011082001 CSP41A RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
GSVIVT01031272001 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
Gb_01706 CSP41A endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Gb_26565 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.04 OrthoFinder output from all 47 species
Gb_37146 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.04 OrthoFinder output from all 47 species
LOC_Os07g11110.1 CSP41A, LOC_Os07g11110 endoribonuclease (CSP41) 0.07 OrthoFinder output from all 47 species
LOC_Os12g23180.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.07 OrthoFinder output from all 47 species
Len_g03236 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13543 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g01195 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g12178 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g11680.1 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.11 OrthoFinder output from all 47 species
Mp1g11690.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp6g11330.1 CSP41A endoribonuclease (CSP41) 0.11 OrthoFinder output from all 47 species
Msp_g23904 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Msp_g36515 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04194 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07510 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g07930 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19880 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31893 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14125 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Pir_g14134 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g10254 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Pnu_g13713 CSP41A endoribonuclease *(CSP41) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10001 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017534 CSP41A endoribonuclease *(CSP41) & original description: CDS=1450-2700 0.04 OrthoFinder output from all 47 species
Sam_g11377 No alias endoribonuclease *(CSP41) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19736 No alias endoribonuclease *(CSP41) & original description: none 0.02 OrthoFinder output from all 47 species
Smo133157 CSP41A RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Smo185868 CSP41A RNA processing.organelle machineries.ribonuclease... 0.07 OrthoFinder output from all 47 species
Smo228849 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Solyc06g073260.3.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
Solyc09g065180.3.1 CSP41A, Solyc09g065180 endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
Spa_g10009 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g12780 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08097 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029297_P001 CRB, HIP1.3,... endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Zm00001e033112_P001 CSP41A, Zm00001e033112 endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!