LOC_Os06g43860 (Os06g0646600)


Aliases : Os06g0646600

Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5).


Gene families : OG_01_0000241 (Gene family) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g43860
Cluster HCCA cluster: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT5G11060 KNAT4 KNOTTED1-like homeobox gene 4 0.03 Gene family
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.02 Gene family
GSVIVT01013790001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
MA_10428500g0010 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
MA_121880g0020 No alias No description available 0.02 Gene family
Smo90744 PACid_15414935 No description available 0.02 Gene family
Solyc02g081120.3.1 Solyc02g081120.3 No description available 0.03 Gene family
Solyc05g005090.3.1 Solyc05g005090.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Solyc07g007120.3.1 Solyc07g007120.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Solyc08g041820.3.1 Solyc08g041820.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d018742 GRMZM2G028041 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Zm00001d033859 GRMZM2G017087 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d033861 GRMZM2G000743 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d035439 GRMZM5G832409 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d040611 GRMZM2G087741 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d046568 GRMZM2G055243 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 254 293
IPR005540 KNOX1 48 85
IPR005539 ELK_dom 214 235
IPR005541 KNOX2 111 157
No external refs found!