LOC_Os06g43790 (Os06g0645700,...)


Aliases : Os06g0645700, Os06g0645800, Os06g0645901

Description : 27.3.54 RNA.regulation of transcription.Histone acetyltransferases This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. HAF01


Gene families : OG_01_0003975 (Gene family) Phylogenetic Tree(s): OG0003975_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g43790
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.08 Gene family
Cre10.g425501 No alias 27.3.54 RNA.regulation of transcription.Histone... 0.02 Gene family
GSVIVT01020528001 No alias 27.3.54 RNA.regulation of transcription.Histone... 0.07 Gene family
Smo409957 PACid_15406292 27.3.54 RNA.regulation of transcription.Histone... 0.02 Gene family
Solyc07g006820.3.1 Solyc07g006820.3 27.3.54 RNA.regulation of transcription.Histone... 0.09 Gene family
Zm00001d046579 GRMZM2G042231,... 27.3.54 RNA.regulation of transcription.Histone... 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 22 65
IPR022591 TFIID_sub1_DUF3591 886 1135
IPR022591 TFIID_sub1_DUF3591 553 863
IPR000626 Ubiquitin_dom 640 708
IPR001487 Bromodomain 1715 1789
No external refs found!