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  5. MA_18241g0010

MA_18241g0010 (SNL4)


Aliases : SNL4

Description : component SNL of histone deacetylase machineries


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_18241g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.04 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.08 OrthoFinder output from all 47 species
AT1G70060 SNL4 SIN3-like 4 0.03 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.1 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.08 OrthoFinder output from all 47 species
Adi_g013447 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Adi_g057345 SNL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058426 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Adi_g074703 SNL3, ATSIN3, SIN3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088432 SNL3, ATSIN3, SIN3 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g103364 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117146 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aev_g21851 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Als_g18269 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Als_g22302 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g27783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32002 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g42067 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52098 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.1 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Aop_g00817 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene27809.t1 SNL4, Aspi01Gene27809 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene57592.t3 SNL5, Aspi01Gene57592 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030537 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Cba_g07499 SNL2 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ceric.02G103800.1 SNL4, Ceric.02G103800 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021234.23 SNL5 Paired amphipathic helix protein Sin3-like 3... 0.01 OrthoFinder output from all 47 species
Dac_g01796 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Dcu_g18941 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Dcu_g18942 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Dde_g03508 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Dde_g18720 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Ehy_g08326 SNL3, ATSIN3, SIN3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10035 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020136001 SNL3, ATSIN3, SIN3 Chromatin organisation.histone modifications.histone... 0.08 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.09 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
Len_g04844 SNL4 component *(SNL) of histone deacetylase machineries &... 0.08 OrthoFinder output from all 47 species
Len_g20482 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Len_g58076 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Lfl_g03500 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Mp3g02880.1 SNL4 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Mp7g11300.1 SNL5 Paired amphipathic helix protein Sin3-like 2... 0.04 OrthoFinder output from all 47 species
Msp_g24890 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ore_g04819 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ore_g30141 SNL2 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ore_g35781 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44719 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13056 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Pir_g18041 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Pnu_g27695 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.01 OrthoFinder output from all 47 species
Ppi_g01419 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ppi_g09115 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Sam_g25571 No alias component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Sam_g29972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35727 No alias component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.11 OrthoFinder output from all 47 species
Solyc02g087360.4.1 SNL2, Solyc02g087360 component SNL of histone deacetylase machineries 0.06 OrthoFinder output from all 47 species
Spa_g15712 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.08 OrthoFinder output from all 47 species
Tin_g19320 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.1 OrthoFinder output from all 47 species
Zm00001e018078_P001 SNL3, ATSIN3,... Paired amphipathic helix protein Sin3-like 3... 0.01 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 517 607
IPR003822 PAH 367 411
IPR003822 PAH 58 102
IPR003822 PAH 144 188
IPR031693 Sin3_C 1180 1436
No external refs found!