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  5. MA_177779g0010

MA_177779g0010


Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana (sp|f4ilr7|dexh1_arath : 300.0)


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_177779g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Ala_g12900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10895 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene70473.t1 Aspi01Gene70473 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0449.g070725 No alias not classified & original description: CDS=208-3285 0.02 OrthoFinder output from all 47 species
Ehy_g07134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os03g53760.1 LOC_Os03g53760 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.07 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18805 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14172 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_19726V3.1 Pp3c17_19726 RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024829 No alias not classified & original description: CDS=1-315 0.04 OrthoFinder output from all 47 species
Sam_g52446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo173775 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.06 OrthoFinder output from all 47 species
Tin_g02164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 98 183
IPR011709 DEAD-box_helicase_OB_fold 262 360
No external refs found!