1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_177435g0010

MA_177435g0010 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 534.0)


Gene families : OG0064093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_177435g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Gb_28200 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 253 279
IPR002885 Pentatricopeptide_repeat 525 550
IPR002885 Pentatricopeptide_repeat 180 209
IPR002885 Pentatricopeptide_repeat 281 310
IPR002885 Pentatricopeptide_repeat 152 178
IPR002885 Pentatricopeptide_repeat 417 447
IPR002885 Pentatricopeptide_repeat 389 415
IPR002885 Pentatricopeptide_repeat 449 497
IPR002885 Pentatricopeptide_repeat 314 361
IPR002885 Pentatricopeptide_repeat 76 125
IPR002885 Pentatricopeptide_repeat 552 598
No external refs found!