LOC_Os01g08450.1


Description : D-class RAB GTPase


Gene families : OG_01_0001076 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001076_tree ,
OG_02_0001162 (LandPlants) Phylogenetic Tree(s): OG_02_0001162_tree ,
OG_03_0001063 (SeedPlants) Phylogenetic Tree(s): OG_03_0001063_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g08450.1
Cluster HCCA: Cluster_342

Target Alias Description ECC score Gene Family Method Actions
AT1G02130 ATRAB1B, RABD2A,... RAS 5 0.05 Archaeplastida
AT5G47200 ATRAB1A, ATRABD2B, RAB1A RAB GTPase homolog 1A 0.08 Archaeplastida
Cpa|evm.model.tig00000455.19 No alias Ras-related protein RABD2c OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00001408.10 No alias Vesicle trafficking.regulation of membrane tethering and... 0.06 Archaeplastida
Cre12.g560150 No alias Vesicle trafficking.regulation of membrane tethering and... 0.05 Archaeplastida
GSVIVT01013868001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.05 Archaeplastida
Gb_26449 No alias D-class RAB GTPase 0.03 Archaeplastida
MA_101924g0020 No alias D-class RAB GTPase 0.05 Archaeplastida
Mp3g00710.1 No alias D-class RAB GTPase 0.09 Archaeplastida
Pp3c10_190V3.1 No alias RAS 5 0.05 Archaeplastida
Pp3c12_8140V3.1 No alias RAB GTPase homolog 1C 0.04 Archaeplastida
Smo228158 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Solyc01g103370.3.1 No alias D-class RAB GTPase 0.02 Archaeplastida
Solyc05g053940.3.1 No alias D-class RAB GTPase 0.09 Archaeplastida
Zm00001e015303_P001 No alias D-class RAB GTPase 0.07 Archaeplastida
Zm00001e023144_P001 No alias D-class RAB GTPase 0.02 Archaeplastida
AT1G02130 ATRAB1B, RABD2A,... RAS 5 0.05 LandPlants
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.02 LandPlants
AT5G47200 ATRAB1A, ATRABD2B, RAB1A RAB GTPase homolog 1A 0.08 LandPlants
GSVIVT01013868001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 LandPlants
Gb_37705 No alias D-class RAB GTPase 0.01 LandPlants
MA_101924g0020 No alias D-class RAB GTPase 0.05 LandPlants
Mp3g00710.1 No alias D-class RAB GTPase 0.07 LandPlants
Pp3c10_190V3.1 No alias RAS 5 0.05 LandPlants
Pp3c12_8140V3.1 No alias RAB GTPase homolog 1C 0.03 LandPlants
Smo228158 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 LandPlants
Solyc01g103370.3.1 No alias D-class RAB GTPase 0.02 LandPlants
Solyc05g053940.3.1 No alias D-class RAB GTPase 0.07 LandPlants
Zm00001e015303_P001 No alias D-class RAB GTPase 0.05 LandPlants
AT1G02130 ATRAB1B, RABD2A,... RAS 5 0.05 SeedPlants
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.02 SeedPlants
AT5G47200 ATRAB1A, ATRABD2B, RAB1A RAB GTPase homolog 1A 0.08 SeedPlants
GSVIVT01013868001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 SeedPlants
Gb_37705 No alias D-class RAB GTPase 0.01 SeedPlants
MA_101924g0020 No alias D-class RAB GTPase 0.03 SeedPlants
MA_20251g0010 No alias D-class RAB GTPase 0.02 SeedPlants
Solyc01g103370.3.1 No alias D-class RAB GTPase 0.02 SeedPlants
Solyc05g053940.3.1 No alias D-class RAB GTPase 0.06 SeedPlants
Zm00001e015303_P001 No alias D-class RAB GTPase 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001806 Small_GTPase 59 219
No external refs found!