LOC_Os06g38510 (Os06g0583900)


Aliases : Os06g0583900

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectate lyase family protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g38510
Cluster HCCA cluster: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT1G14420 AT59 Pectate lyase family protein 0.04 Gene family
AT1G67750 No alias Pectate lyase family protein 0.03 Gene family
AT3G01270 No alias Pectate lyase family protein 0.03 Gene family
AT5G15110 No alias Pectate lyase family protein 0.03 Gene family
LOC_Os02g12300 Os02g0214400 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os06g05209 Os06g0144200 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os06g05260 Os06g0144900 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc01g010740.3.1 Solyc01g010740.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g067450.3.1 Solyc02g067450.3 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc02g087670.3.1 Solyc02g087670.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g058890.3.1 Solyc03g058890.3 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Solyc06g071020.3.1 Solyc06g071020.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d000216 GRMZM2G323418 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Zm00001d036158 GRMZM2G364349 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 180 364
IPR007524 Pec_lyase_N 34 84
No external refs found!