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  5. MA_161374g0020

MA_161374g0020 (PUB18, ATPUB18)


Aliases : PUB18, ATPUB18

Description : U-box domain-containing protein 1 OS=Medicago truncatula (sp|e4nkf8|pub1_medtr : 155.0)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_161374g0020

Target Alias Description ECC score Gene Family Method Actions
Aev_g05257 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene71894.t1 PUB8, B80,... E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04504 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02285 ATPUB17, PUB17 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10349323g0010 PUB14, ATPUB14 U-box domain-containing protein 12 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Ore_g07686 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000225 Armadillo 61 98
No external refs found!