LOC_Os06g36680 (Os06g0562300)


Aliases : Os06g0562300

Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. homeobox gene 1 (ATH1)


Gene families : OG_01_0000167 (Gene family) Phylogenetic Tree(s): OG0000167_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g36680
Cluster HCCA cluster: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT1G75430 BLH11 BEL1-like homeodomain 11 0.03 Gene family
AT4G32980 ATH1 homeobox gene 1 0.04 Gene family
GSVIVT01035361001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Solyc08g065420.3.1 Solyc08g065420.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Solyc09g011380.3.1 Solyc09g011380.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Solyc11g069890.2.1 Solyc11g069890.2 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d016298 GRMZM2G161435 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d027802 GRMZM2G004641 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d033898 GRMZM2G396114 No description available 0.02 Gene family
Zm00001d038355 GRMZM2G125976 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Zm00001d042864 GRMZM2G154641 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 467 506
IPR006563 POX_dom 274 400
No external refs found!