LOC_Os06g35370 (Os06g0545800)


Aliases : Os06g0545800

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000381 (Gene family) Phylogenetic Tree(s): OG0000381_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g35370
Cluster HCCA cluster: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Solyc00g030510.3.1 Solyc00g030510.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d015821 GRMZM2G151755 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Zm00001d036815 GRMZM2G160626 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d036821 GRMZM2G094811 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d036822 GRMZM2G394259 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d036823 GRMZM2G320175,... 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d053662 GRMZM2G030265 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 72 401
No external refs found!