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  5. MA_138440g0010

MA_138440g0010 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_138440g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00254030 SHP2, AGL5,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00089p00081270 PI,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00127p00060060 SVP, AGL22,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Adi_g051962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17392 AGL71 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33718 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44552.t1 AGL13, Aspi01Gene44552 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G042700.1 AGL7, AP1,... MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dde_g30254 AGL79 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01002442001 AGL24 RNA biosynthesis.transcriptional activation.MADS box... 0.07 OrthoFinder output from all 47 species
GSVIVT01009171001 SVP, AGL22 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
Gb_11016 AGL10, CAL1, CAL no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g01355.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g08754.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os04g23910.1 AGL16, LOC_Os04g23910 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Len_g28209 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g56388 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36481 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10332736g0010 STK, AGL11 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_576145g0010 GL19, AGL19 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g43918 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40304 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09891 AGL66 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14875 AGL65 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g078300.3.1 AGL104, Solyc04g078300 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc06g069430.3.1 AGL8, FUL, Solyc06g069430 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g22852 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!