LOC_Os01g01960.1

Description : component SNL of histone deacetylase machineries

Gene families : OG_01_0000780 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000780_tree ,
OG_02_0001649 (LandPlants) Phylogenetic Tree(s): OG_02_0001649_tree ,
OG_03_0003070 (SeedPlants) Phylogenetic Tree(s): OG_03_0003070_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g01960.1
Cluster	HCCA: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.02	Archaeplastida
AT1G70060	SNL4	SIN3-like 4	0.03	Archaeplastida
AT3G01320	SNL1	SIN3-like 1	0.03	Archaeplastida
Cpa\|evm.model.tig00001155.28	No alias	Paired amphipathic helix protein Sin3-like 1...	0.01	Archaeplastida
Cre03.g180800	No alias	Paired amphipathic helix protein Sin3-like 4...	0.04	Archaeplastida
GSVIVT01020136001	No alias	Chromatin organisation.histone modifications.histone...	0.03	Archaeplastida
Mp3g02880.1	No alias	component SNL of histone deacetylase machineries	0.03	Archaeplastida
Mp5g20010.1	No alias	Paired amphipathic helix protein Sin3-like 4...	0.02	Archaeplastida
Mp7g11300.1	No alias	Paired amphipathic helix protein Sin3-like 2...	0.02	Archaeplastida
Smo440352	No alias	Chromatin organisation.histone modifications.histone...	0.02	Archaeplastida
AT3G01320	SNL1	SIN3-like 1	0.02	LandPlants
GSVIVT01020136001	No alias	Chromatin organisation.histone modifications.histone...	0.02	LandPlants
Smo440352	No alias	Chromatin organisation.histone modifications.histone...	0.02	LandPlants
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.01	SeedPlants
AT1G70060	SNL4	SIN3-like 4	0.01	SeedPlants
AT3G01320	SNL1	SIN3-like 1	0.02	SeedPlants
AT5G15020	SNL2	SIN3-like 2	0.02	SeedPlants
GSVIVT01020136001	No alias	Chromatin organisation.histone modifications.histone...	0.02	SeedPlants
GSVIVT01032579001	No alias	Chromatin organisation.histone modifications.histone...	0.01	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	386	478
IPR003822	PAH	72	116
IPR003822	PAH	1	36
IPR003822	PAH	265	308
IPR031693	Sin3_C	1038	1286

External Links

No external refs found!