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  5. MA_138254g0010

MA_138254g0010 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : Periodic tryptophan protein 2 OS=Arabidopsis thaliana (sp|q8vyz5|pwp2_arath : 157.0)


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_138254g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.02 OrthoFinder output from all 47 species
Cre06.g254150 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01017243001 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_23048 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.02 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.04 OrthoFinder output from all 47 species
MA_188621g0010 PWP2, ATPWP2 Periodic tryptophan protein 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g120080.4.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 26 131
No external refs found!