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  5. MA_136157g0010

MA_136157g0010


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 734.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_136157g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00256680 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00149460 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g036534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088438 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088439 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32427 No alias regulatory protein *(RLD) of gravity sensing & original... 0.02 OrthoFinder output from all 47 species
Aop_g22503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001281 No alias not classified & original description: CDS=1653-4202 0.04 OrthoFinder output from all 47 species
Cba_g15359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G040000.1 Ceric.09G040000 not classified & original description: pacid=50586756... 0.04 OrthoFinder output from all 47 species
Dac_g11534 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037259001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
LOC_Os05g01610.1 PRAF1, LOC_Os05g01610 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
LOC_Os05g31920.2 LOC_Os05g31920 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Nbi_g01497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo180358 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc03g116360.2.1 Solyc03g116360 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc11g065120.3.1 Solyc11g065120 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e007456_P003 PRAF1, Zm00001e007456 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e018599_P001 Zm00001e018599 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e023246_P001 Zm00001e023246 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 644 710
IPR000408 Reg_chr_condens 593 640
IPR000408 Reg_chr_condens 490 536
IPR000408 Reg_chr_condens 539 588
IPR000408 Reg_chr_condens 368 420
IPR000408 Reg_chr_condens 424 472
IPR000408 Reg_chr_condens 317 365
No external refs found!