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Description : component Pcf11 of Cleavage Factor II (CF-IIm) complex
Gene families : OG0001185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001185_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_132868g0010 | |
| Cluster | HCCA: Cluster_241 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g021559 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g112058 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g18258 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g18266 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g10884 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g11854 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g21890 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g13602 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g22117 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g31315 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene70306.t1 | PCFS4, Aspi01Gene70306 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.04G047300.1 | Ceric.04G047300 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.20G037600.1 | Ceric.20G037600 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.39G023900.1 | PCFS4, Ceric.39G023900 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000396.25 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000396.26 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g09800 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01012646001 | PCFS4 | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01033783001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_26268 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os08g08830.1 | PCFS4, LOC_Os08g08830 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g39270.1 | LOC_Os09g39270 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.07 | OrthoFinder output from all 47 species | |
| Len_g09019 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g14750 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g11409 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g16594 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10433250g0020 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Mp8g18940.1 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g08557 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g13187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g43016 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g44715 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g02318 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g61800 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g31624 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g04002 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57483 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012185 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0061.g015402 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g009120.4.1 | Solyc09g009120 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.07 | OrthoFinder output from all 47 species | |
| Solyc10g083590.2.1 | Solyc10g083590 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e009485_P001 | Zm00001e009485 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e021648_P002 | PCFS4, Zm00001e021648 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e033620_P001 | Zm00001e033620 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e039948_P002 | PCFS4, Zm00001e039948 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |