Description : plant-specific E3 ubiquitin ligase (RSL/RFA)
Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_132042g0010 | |
Cluster | HCCA: Cluster_18 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00129p00116540 | evm_27.TU.AmTr_v1... | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001006.5 | No alias | ATP-dependent RNA helicase DEAH12, chloroplastic... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g40875 | No alias | plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os09g26470.1 | LOC_Os09g26470 | plant-specific E3 ubiquitin ligase (RSL/RFA) | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g06303 | No alias | plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc03g117860.3.1 | Solyc03g117860 | plant-specific E3 ubiquitin ligase (RSL/RFA) | 0.03 | OrthoFinder output from all 47 species | |
Spa_g40446 | No alias | plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003924 | GTPase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004525 | ribonuclease III activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002867 | IBR_dom | 177 | 236 |
No external refs found! |