ChrUn.fgenesh.mRNA.7


Description : no hits & (original description: none)


Gene families : OG_01_0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0006138 (LandPlants) Phylogenetic Tree(s): OG_02_0006138_tree ,
OG_03_0003644 (SeedPlants) Phylogenetic Tree(s): OG_03_0003644_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrUn.fgenesh.mRNA.7
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.17 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.16 Archaeplastida
ChrSy.fgenesh.mRNA.22 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.38 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.55 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrSy.fgenesh.mRNA.57 No alias no hits & (original description: none) 0.03 Archaeplastida
ChrSy.fgenesh.mRNA.62 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.12 Archaeplastida
ChrUn.fgenesh.mRNA.15 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.12 Archaeplastida
ChrUn.fgenesh.mRNA.27 No alias no hits & (original description: none) 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.5 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.52 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.08 Archaeplastida
ChrUn.fgenesh.mRNA.88 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
LOC_Os09g02520.1 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.17 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.16 LandPlants
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 LandPlants
ChrSy.fgenesh.mRNA.38 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 LandPlants
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.06 LandPlants
ChrSy.fgenesh.mRNA.57 No alias no hits & (original description: none) 0.03 LandPlants
ChrUn.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.14 LandPlants
ChrUn.fgenesh.mRNA.15 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.12 LandPlants
ChrUn.fgenesh.mRNA.47 No alias no hits & (original description: none) 0.07 LandPlants
ChrUn.fgenesh.mRNA.52 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 LandPlants
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.08 LandPlants
ChrSy.fgenesh.mRNA.17 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.14 SeedPlants
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 SeedPlants
ChrSy.fgenesh.mRNA.38 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 SeedPlants
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.06 SeedPlants
ChrSy.fgenesh.mRNA.57 No alias no hits & (original description: none) 0.03 SeedPlants
ChrUn.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.14 SeedPlants
ChrUn.fgenesh.mRNA.15 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.12 SeedPlants
ChrUn.fgenesh.mRNA.47 No alias no hits & (original description: none) 0.07 SeedPlants
ChrUn.fgenesh.mRNA.52 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 SeedPlants
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 707 759
IPR041588 Integrase_H2C2 860 916
IPR000477 RT_dom 592 680
IPR005162 Retrotrans_gag_dom 242 337
No external refs found!