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  5. MA_12940g0010

MA_12940g0010


Description : histone (H2B)


Gene families : OG0001301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12940g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00158970 evm_27.TU.AmTr_v1... Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00065p00110200 evm_27.TU.AmTr_v1... Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00078p00164770 evm_27.TU.AmTr_v1... Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AT2G30020 No alias Protein phosphatase 2C family protein 0.04 OrthoFinder output from all 47 species
Adi_g079500 PP2C5, ATHPP2C5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28060 No alias clade B phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g17266 No alias clade B phosphatase & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g07103 No alias clade B phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13821 No alias clade B phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06701.t1 Aspi01Gene06701 clade B phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G022700.1 Ceric.05G022700 clade B phosphatase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.05G022800.1 Ceric.05G022800 clade B phosphatase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g05168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27780 No alias clade B phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39979 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g39980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13761 No alias clade B phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024710001 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01036289001 No alias Probable protein phosphatase 2C 74 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os03g18150.1 LOC_Os03g18150 Probable protein phosphatase 2C 32 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Len_g23780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12331 PP2C5, ATHPP2C5 clade B phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430806g0010 No alias Probable protein phosphatase 2C 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_10430806g0020 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
MA_1114215g0010 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
MA_1274g0010 No alias Probable protein phosphatase 2C 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_128174g0010 PP2C5, ATHPP2C5 Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_134564g0010 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_183946g0010 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
MA_185569g0010 No alias histone (H2B) 0.04 OrthoFinder output from all 47 species
MA_223907g0010 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_749790g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_77486g0010 No alias Probable protein phosphatase 2C 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_8110430g0010 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_9664807g0010 No alias Probable protein phosphatase 2C 25 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp6g11540.1 No alias clade B phosphatase 0.03 OrthoFinder output from all 47 species
Pir_g48663 No alias clade B phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33412 PP2C5, ATHPP2C5 clade B phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g052520.3.1 Solyc05g052520 Probable protein phosphatase 2C 30 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc06g007190.4.1 Solyc06g007190 Probable protein phosphatase 2C 2 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Spa_g23587 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08957 PP2C5, ATHPP2C5 clade B phosphatase & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 93 279
IPR007125 Histone_H2A/H2B/H3 325 370
No external refs found!