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  5. MA_128872g0020

MA_128872g0020


Description : Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana (sp|q8lps6|ppr3_arath : 293.0)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_128872g0020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.04 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g33654 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09907 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060292 No alias RNA editing factor *(POCO) & original description: CDS=143-2071 0.02 OrthoFinder output from all 47 species
Ceric.17G065300.1 Ceric.17G065300 RNA editing factor *(POCO) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g21533 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
GSVIVT01028139001 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.03 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.05 OrthoFinder output from all 47 species
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.04 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
LOC_Os12g34340.1 LOC_Os12g34340 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
Len_g15360 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19004 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37557 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Msp_g31351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02315 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29727 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g078330.3.1 Solyc02g078330 Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
Solyc12g020050.2.1 PPR596, Solyc12g020050 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007372_P001 Zm00001e007372 Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
Zm00001e039746_P002 Zm00001e039746 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 422 450
IPR002885 Pentatricopeptide_repeat 311 336
IPR002885 Pentatricopeptide_repeat 226 282
No external refs found!