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  5. MA_12604g0010

MA_12604g0010


Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 199.0)


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12604g0010
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g010429 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06699 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015733 No alias not classified & original description: CDS=260-2488 0.03 OrthoFinder output from all 47 species
Azfi_s0194.g057204 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Azfi_s0280.g062273 No alias not classified & original description: CDS=315-2570 0.02 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G007100.1 Ceric.14G007100 not classified & original description: pacid=50632910... 0.04 OrthoFinder output from all 47 species
Ceric.32G028300.1 Ceric.32G028300 not classified & original description: pacid=50598029... 0.05 OrthoFinder output from all 47 species
Dac_g05129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os06g23460.1 LOC_Os06g23460 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
LOC_Os09g32300.1 LOC_Os09g32300 KH domain-containing protein HEN4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g32267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13999 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ppi_g01057 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g01260 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019575 No alias not classified & original description: CDS=226-2445 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020404 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Sam_g08472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13844 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Sam_g35222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo73985 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Solyc03g082980.3.1 Solyc03g082980 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Spa_g08106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17412 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g07199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010096_P002 Zm00001e010096 KH domain-containing protein HEN4 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 190 256
IPR004088 KH_dom_type_1 50 101
IPR004088 KH_dom_type_1 345 395
IPR004088 KH_dom_type_1 429 497
No external refs found!