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  5. MA_125741g0010

MA_125741g0010


Description : Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana (sp|q9ffe3|pp388_arath : 475.0)


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_125741g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
AMTR_s00037p00138240 EMB1025,... Pentatricopeptide repeat-containing protein At4g20090... 0.03 OrthoFinder output from all 47 species
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G13150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Cba_g01242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G014000.1 Ceric.22G014000 not classified & original description: pacid=50615208... 0.03 OrthoFinder output from all 47 species
Dcu_g11618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
Gb_14900 EMB1025 Pentatricopeptide repeat-containing protein At4g20090... 0.03 OrthoFinder output from all 47 species
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 OrthoFinder output from all 47 species
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g63400.1 LOC_Os01g63400 Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.02 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.02 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.02 OrthoFinder output from all 47 species
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.02 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.04 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc02g079830.1.1 Solyc02g079830 Pentatricopeptide repeat-containing protein At3g13160,... 0.02 OrthoFinder output from all 47 species
Solyc04g076070.1.1 Solyc04g076070 Pentatricopeptide repeat-containing protein At5g18475... 0.03 OrthoFinder output from all 47 species
Solyc05g012250.3.1 Solyc05g012250 Pentatricopeptide repeat-containing protein At1g80150,... 0.04 OrthoFinder output from all 47 species
Solyc07g045380.3.1 Solyc07g045380 Pentatricopeptide repeat-containing protein At1g05600... 0.03 OrthoFinder output from all 47 species
Solyc09g014210.3.1 Solyc09g014210 Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
Solyc10g005280.1.1 PPR336, Solyc10g005280 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 OrthoFinder output from all 47 species
Zm00001e027557_P001 Zm00001e027557 Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
Zm00001e028732_P001 Zm00001e028732 Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
Zm00001e034625_P001 Zm00001e034625 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 194 242
IPR002885 Pentatricopeptide_repeat 302 348
IPR002885 Pentatricopeptide_repeat 403 452
IPR002885 Pentatricopeptide_repeat 261 293
IPR002885 Pentatricopeptide_repeat 365 397
IPR002885 Pentatricopeptide_repeat 113 172
No external refs found!