ChrSy.fgenesh.mRNA.62


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 82.0)


Gene families : OG_01_0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0009090 (LandPlants) Phylogenetic Tree(s): OG_02_0009090_tree ,
OG_03_0008068 (SeedPlants) Phylogenetic Tree(s): OG_03_0008068_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.62
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
ATMG00860 ORF158 DNA/RNA polymerases superfamily protein 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.1 Archaeplastida
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.09 Archaeplastida
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.60 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.07 Archaeplastida
Cpa|evm.model.tig00000788.14 No alias Uncharacterized mitochondrial protein AtMg00860... 0.01 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.04 Archaeplastida
Gb_06149 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
Gb_12881 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_18576 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_23550 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_25344 No alias Uncharacterized mitochondrial protein AtMg00860... 0.05 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_30086 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
LOC_Os08g05250.1 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 LandPlants
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000477 RT_dom 858 944
IPR005162 Retrotrans_gag_dom 275 365
No external refs found!