AMTR_s00061p00127560 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.104

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D1 component


Gene families : OG_01_0004011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004011_tree ,
OG_02_0004085 (LandPlants) Phylogenetic Tree(s): OG_02_0004085_tree ,
OG_03_0004116 (SeedPlants) Phylogenetic Tree(s): OG_03_0004116_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00127560
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
AT4G02840 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000754.23 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
LOC_Os02g37430.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
MA_466601g0010 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Mp1g03900.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
Pp3c13_22270V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Solyc06g084310.4.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Solyc09g064660.4.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Zm00001e007844_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e022838_P001 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.04 LandPlants
LOC_Os02g37430.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 LandPlants
LOC_Os04g39444.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 LandPlants
Mp1g03900.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.06 LandPlants
Pp3c13_22270V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 LandPlants
Solyc06g084310.4.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.03 LandPlants
Solyc09g064660.4.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 LandPlants
Zm00001e007844_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e022838_P001 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 LandPlants
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.04 SeedPlants
AT4G02840 No alias Small nuclear ribonucleoprotein family protein 0.02 SeedPlants
LOC_Os02g37430.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants
LOC_Os04g39444.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants
MA_96784g0010 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants
Solyc06g084310.4.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants
Solyc09g064660.4.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants
Zm00001e007844_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e022838_P001 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 70
No external refs found!