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  5. MA_122608g0010

MA_122608g0010 (At-SCL28, SCL28)


Aliases : At-SCL28, SCL28

Description : SCL28/30/33 RNA splicing factor


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_122608g0010

Target Alias Description ECC score Gene Family Method Actions
Adi_g014842 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022936 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G035200.1 At-SCL30A,... RNA splicing factor *(SCL28/30/33) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.16 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre13.g586916 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dac_g23786 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35644 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18442 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016562001 SCL30, At-SCL30 RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01022010001 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_06441 At-SCL30A, SCL30A no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g43950.1 At-SCL30A,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012699 No alias not classified & original description: CDS=138-887 0.03 OrthoFinder output from all 47 species
Spa_g11978 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29764 At-SCL30A, SCL30A EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 181
No external refs found!