ChrSy.fgenesh.mRNA.22


Description : no hits & (original description: none)


Gene families : OG_01_0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0009090 (LandPlants) Phylogenetic Tree(s): OG_02_0009090_tree ,
OG_03_0008068 (SeedPlants) Phylogenetic Tree(s): OG_03_0008068_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.22
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.27 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_30086 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g05250.1 No alias no hits & (original description: none) 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 LandPlants
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 1246 1350
IPR000477 RT_dom 1079 1182
IPR001584 Integrase_cat-core 1706 1816
IPR005162 Retrotrans_gag_dom 472 561
IPR002156 RNaseH_domain 1420 1538
No external refs found!