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  5. MA_121267g0010

MA_121267g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 426.0)


Gene families : OG0008022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_121267g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Adi_g017397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g032914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034260 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_05438 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Gb_05439 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_99947g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 236
IPR002885 Pentatricopeptide_repeat 25 73
IPR002885 Pentatricopeptide_repeat 290 338
IPR002885 Pentatricopeptide_repeat 129 158
IPR002885 Pentatricopeptide_repeat 160 188
IPR002885 Pentatricopeptide_repeat 364 389
IPR002885 Pentatricopeptide_repeat 101 127
No external refs found!