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  5. MA_118446g0010

MA_118446g0010 (ATDCL3, DCL3)


Aliases : ATDCL3, DCL3

Description : Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica (sp|q5n870|dcl3a_orysj : 184.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_118446g0010
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00252700 ATRTL2, RTL2,... RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III... 0.05 OrthoFinder output from all 47 species
AMTR_s00016p00258500 ATDCL2, DCL2,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.05 OrthoFinder output from all 47 species
AT3G20420 ATRTL2, RTL2 RNAse THREE-like protein 2 0.03 OrthoFinder output from all 47 species
Ala_g21964 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0335.g065527 DCL1, CAF,... not classified & original description: CDS=85-2319 0.03 OrthoFinder output from all 47 species
Ceric.14G005300.1 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Cre02.g141000 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01001045001 DCL4, ATDCL4 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.03 OrthoFinder output from all 47 species
Gb_34767 ATDCL3, DCL3 endoribonuclease (DCL3). endoribonuclease (DCL4) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 113 227
No external refs found!