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  5. MA_113202g0010

MA_113202g0010 (OTP86)


Aliases : OTP86

Description : Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana (sp|q9ss83|pp220_arath : 506.0)


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_113202g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g059183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116058 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33799 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo105057 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.03 OrthoFinder output from all 47 species
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.03 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 517 547
IPR002885 Pentatricopeptide_repeat 219 246
IPR002885 Pentatricopeptide_repeat 282 330
IPR002885 Pentatricopeptide_repeat 616 663
IPR002885 Pentatricopeptide_repeat 550 598
IPR002885 Pentatricopeptide_repeat 717 764
IPR002885 Pentatricopeptide_repeat 415 463
IPR002885 Pentatricopeptide_repeat 129 141
IPR002885 Pentatricopeptide_repeat 100 126
IPR002885 Pentatricopeptide_repeat 386 414
IPR002885 Pentatricopeptide_repeat 193 218
IPR002885 Pentatricopeptide_repeat 690 716
IPR002885 Pentatricopeptide_repeat 791 816
IPR002885 Pentatricopeptide_repeat 254 279
IPR002885 Pentatricopeptide_repeat 355 384
No external refs found!