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  5. MA_11225g0010

MA_11225g0010


Description : E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana (sp|q9lta6|wav3_arath : 234.0)


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_11225g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00020480 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G08050 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 OrthoFinder output from all 47 species
AT2G22680 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.06 OrthoFinder output from all 47 species
Adi_g021972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22775.t1 Aspi01Gene22775 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G060200.1 Ceric.09G060200 not classified & original description: pacid=50588484... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.58 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre12.g500550 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g23044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38041 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016259001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
Gb_01603 No alias ubiquitin protein ligase (WAV3) 0.03 OrthoFinder output from all 47 species
Gb_07921 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_30682 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04890.1 LOC_Os03g04890 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os04g01160.1 LOC_Os04g01160 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
LOC_Os04g42980.1 LOC_Os04g42980 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os08g03270.1 LOC_Os08g03270 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.03 OrthoFinder output from all 47 species
LOC_Os12g24390.1 LOC_Os12g24390 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g08600.1 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g24649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28913 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22747 No alias E3 ubiquitin ligase *(WAV3) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005076 No alias not classified & original description: CDS=439-2763 0.03 OrthoFinder output from all 47 species
Solyc11g069600.2.1 Solyc11g069600 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g14357 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50317 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000344_P001 Zm00001e000344 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e004620_P001 Zm00001e004620 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e004621_P001 Zm00001e004621 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e016170_P004 Zm00001e016170 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e041206_P001 Zm00001e041206 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 82 111
IPR032838 Vwaint_dom 675 748
IPR002035 VWF_A 310 500
No external refs found!