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  5. MA_10437227g0010

MA_10437227g0010


Description : pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437227g0010
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 OrthoFinder output from all 47 species
AT1G11920 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT3G07010 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G22080 RHS14 root hair specific 14 0.02 OrthoFinder output from all 47 species
AT5G04310 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G48900 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g013762 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19777 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17935.t1 Aspi01Gene17935 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G068000.1 Ceric.22G068000 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00879 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03656 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 OrthoFinder output from all 47 species
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
Gb_02248 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10353668g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_185203g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
Mp3g01000.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Mp8g10190.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Ore_g26215 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41165 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_16370V3.1 Pp3c17_16370 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc01g010740.4.1 AT59, Solyc01g010740 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc06g071840.3.1 Solyc06g071840 Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.05 OrthoFinder output from all 47 species
Solyc09g008380.3.1 Solyc09g008380 pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc11g008140.3.1 Solyc11g008140 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008755_P002 Zm00001e008755 pectate lyase 0.04 OrthoFinder output from all 47 species
Zm00001e040624_P001 Zm00001e040624 pectate lyase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 14 135
No external refs found!