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MA_10437094g0010


Description : DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana (sp|f4jaa5|ski2_arath : 317.0)


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437094g0010
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 HEN2,... RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
Adi_g022453 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Aev_g01540 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ala_g07168 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Aop_g27842 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g015921 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Ceric.15G051600.1 Ceric.15G051600 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Dac_g24078 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Dcu_g18967 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Ehy_g01701 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.06 OrthoFinder output from all 47 species
Len_g22463 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Nbi_g03153 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ore_g15707 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ore_g41022 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Solyc01g103080.3.1 Solyc01g103080 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
Solyc05g047520.4.1 HEN2, Solyc05g047520 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Solyc06g005990.4.1 Solyc06g005990 DExH-box ATP-dependent RNA helicase DExH11... 0.02 OrthoFinder output from all 47 species
Solyc12g017860.3.1 HEN2, Solyc12g017860 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Spa_g29638 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.06 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.06 OrthoFinder output from all 47 species
Zm00001e036710_P004 Zm00001e036710 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 94 235
No external refs found!