MA_10436810g0020

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10436810g0020
Cluster	HCCA: Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
AT3G62150	PGP21	P-glycoprotein 21	0.05	OrthoFinder output from all 47 species
Adi_g010452	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g17861	ABCB19,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g24244	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g09585	PGP10	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g39233	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22201	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11005	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13591	PGP6	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14003	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08455.t1	PGP11, Aspi01Gene08455	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42794.t1	ATPGP4, PGP4,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46501.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene52651.t1	PGP2, Aspi01Gene52651	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0010.g012029	ABCB19,...	subfamily ABCB transporter & original description: CDS=121-4035	0.02	OrthoFinder output from all 47 species
Azfi_s2496.g111845	ABCB19,...	subfamily ABCB transporter & original description: CDS=142-3066	0.03	OrthoFinder output from all 47 species
Ceric.35G032800.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000572.5	PGP1, ABCB1, ATPGP1	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Dac_g39907	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g20621	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g47815	PGP11	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g46023	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13700	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Gb_02468	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_02469	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_07563	ABCB19,...	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Gb_32125	PGP11	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_33057	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_33058	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g18670.1	PGP21, LOC_Os01g18670	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g50160.1	PGP11, LOC_Os01g50160	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os02g09720.1	LOC_Os02g09720	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Lfl_g41280	PGP11	not classified & original description: none	0.01	OrthoFinder output from all 47 species
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_178534g0010	PGP2	ABC transporter B family member 2 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_1824g0020	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
MA_8519205g0010	PGP17	ABC transporter B family member 17 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
MA_93218g0010	PGP11	ABC transporter B family member 4 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Mp2g02920.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Msp_g36979	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g09833	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g22891	PGP13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g57324	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g20355	PGP21	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g25857	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c17_16450V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Ppi_g04001	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018197	ABCB19,...	subfamily ABCB transporter & original description: CDS=226-4089	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197	No alias	subfamily ABCB transporter & original description: CDS=1-2220	0.02	OrthoFinder output from all 47 species
Smo419451	No alias	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Solyc06g009280.1.1	PGP11, Solyc06g009280	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc06g009290.4.1	PGP21, Solyc06g009290	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc11g067300.2.1	PGP11, Solyc11g067300	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Spa_g09413	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g21974	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g26470	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g06701	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e041087_P002	Zm00001e041087	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1006	1154
IPR003439	ABC_transporter-like_ATP-bd	920	997
IPR011527	ABC1_TM_dom	54	286
IPR011527	ABC1_TM_dom	1301	1425
IPR011527	ABC1_TM_dom	1430	1538
IPR011527	ABC1_TM_dom	660	840
IPR003439	ABC_transporter-like_ATP-bd	366	494
IPR003439	ABC_transporter-like_ATP-bd	1618	1662

External Links

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MA_10436810g0020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation