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  5. MA_10436389g0010

MA_10436389g0010


Description : pre-40S ribosomal subunit assembly factor (UTP22)


Gene families : OG0006078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436389g0010
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT1G63810 No alias CONTAINS InterPro DOMAIN/s: Nrap protein... 0.06 OrthoFinder output from all 47 species
Aob_g23371 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Ceric.24G063300.1 Ceric.24G063300 pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g25897 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01018952001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os12g06910.1 LOC_Os12g06910 pre-40S ribosomal subunit assembly factor (UTP22) 0.05 OrthoFinder output from all 47 species
Mp6g08990.1 No alias pre-40S ribosomal subunit assembly factor (UTP22) 0.04 OrthoFinder output from all 47 species
Sam_g08101 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Smo407792 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc02g085230.3.1 Solyc02g085230 pre-40S ribosomal subunit assembly factor (UTP22) 0.04 OrthoFinder output from all 47 species
Zm00001e018445_P001 Zm00001e018445 pre-40S ribosomal subunit assembly factor (UTP22) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR035369 Nrap_D4 161 204
IPR035368 Nrap_D3 14 139
No external refs found!