MA_10435952g0010


Description : SSU processome assembly factor (UTP6)


Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435952g0010

Target Alias Description ECC score Gene Family Method Actions
AT4G28200 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.09 OrthoFinder output from all 47 species
Aev_g01496 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Als_g22988 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Aop_g08502 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2889.g113567 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.29 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre10.g442000 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g03852 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012705001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Gb_01417 No alias SSU processome assembly factor (UTP6) 0.02 OrthoFinder output from all 47 species
LOC_Os02g01350.1 LOC_Os02g01350 SSU processome assembly factor (UTP6) 0.08 OrthoFinder output from all 47 species
Mp7g18520.1 No alias SSU processome assembly factor (UTP6) 0.06 OrthoFinder output from all 47 species
Ore_g44960 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Pir_g09702 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Sam_g29993 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Tin_g02822 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e011580_P001 Zm00001e011580 SSU processome assembly factor (UTP6) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013949 Utp6 1 73
No external refs found!