MA_10435952g0010

Description : SSU processome assembly factor (UTP6)

Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10435952g0010

Target	Alias	Description	ECC score	Gene Family Method
AT4G28200	No alias	FUNCTIONS IN: molecular_function unknown; INVOLVED IN:...	0.09	OrthoFinder output from all 47 species
Aev_g01496	No alias	SSU processome assembly factor *(UTP6) & original...	0.02	OrthoFinder output from all 47 species
Als_g22988	No alias	SSU processome assembly factor *(UTP6) & original...	0.03	OrthoFinder output from all 47 species
Aop_g08502	No alias	SSU processome assembly factor *(UTP6) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s2889.g113567	No alias	SSU processome assembly factor *(UTP6) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000571.29	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Cre10.g442000	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g03852	No alias	SSU processome assembly factor *(UTP6) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01012705001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_01417	No alias	SSU processome assembly factor (UTP6)	0.02	OrthoFinder output from all 47 species
LOC_Os02g01350.1	LOC_Os02g01350	SSU processome assembly factor (UTP6)	0.08	OrthoFinder output from all 47 species
Mp7g18520.1	No alias	SSU processome assembly factor (UTP6)	0.06	OrthoFinder output from all 47 species
Ore_g44960	No alias	SSU processome assembly factor *(UTP6) & original...	0.02	OrthoFinder output from all 47 species
Pir_g09702	No alias	SSU processome assembly factor *(UTP6) & original...	0.03	OrthoFinder output from all 47 species
Sam_g29993	No alias	SSU processome assembly factor *(UTP6) & original...	0.04	OrthoFinder output from all 47 species
Tin_g02822	No alias	SSU processome assembly factor *(UTP6) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e011580_P001	Zm00001e011580	SSU processome assembly factor (UTP6)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
MF	GO:0030515	snoRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013949	Utp6	1	73

External Links

No external refs found!

MA_10435952g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation