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  5. MA_10435839g0010

MA_10435839g0010 (ATRDRP1, RDR1)


Aliases : ATRDRP1, RDR1

Description : RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana (sp|q9lqv2|rdr1_arath : 811.0)


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435839g0010

Target Alias Description ECC score Gene Family Method Actions
Aev_g18083 SMD1, RDR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020816.45 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g13290 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23245 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011643001 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_17277 ATRDRP1, RDR1 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_28426 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_28433 ATRDRP1, RDR1 ssRNA polymerase (RDR2) 0.04 OrthoFinder output from all 47 species
Ore_g03519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g007510.4.1 ATRDRP1, RDR1,... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g06684 SMD1, RDR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015753_P001 ATRDRP1, RDR1,... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 418 906
No external refs found!