LOC_Os06g13660 (Os06g0245800)


Aliases : Os06g0245800

Description : 29.1.7 protein.aa activation.alanine-tRNA ligase A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. EMBRYO DEFECTIVE 1030 (EMB1030)


Gene families : OG_01_0001080 (Gene family) Phylogenetic Tree(s): OG0001080_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g13660
Cluster HCCA cluster: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AT5G22800 EMB86, EMB1030, EMB263 Alanyl-tRNA synthetase, class IIc 0.08 Gene family
Cre02.g143200 No alias 29.1.7 protein.aa activation.alanine-tRNA ligase... 0.01 Gene family
Cre08.g368900 No alias 29.1.7 protein.aa activation.alanine-tRNA ligase A locus... 0.03 Gene family
GSVIVT01023918001 No alias 29.1.7 protein.aa activation.alanine-tRNA ligase A locus... 0.12 Gene family
MA_10282308g0010 No alias 29.1.7 protein.aa activation.alanine-tRNA ligase A locus... 0.05 Gene family
Solyc01g111990.3.1 Solyc01g111990.3 29.1.7 protein.aa activation.alanine-tRNA ligase A locus... 0.11 Gene family

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA InterProScan
MF GO:0004813 alanine-tRNA ligase activity IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
BP GO:0006419 alanyl-tRNA aminoacylation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012947 tRNA_SAD 702 745
IPR003156 DHHA1_dom 782 922
IPR018164 Ala-tRNA-synth_IIc_N 40 604
No external refs found!