LOC_Os06g12400 (Os06g0229300)


Aliases : Os06g0229300

Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains. HAT3.1


Gene families : OG_01_0002034 (Gene family) Phylogenetic Tree(s): OG0002034_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os06g12400
Cluster HCCA cluster: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
Cre12.g492200 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.01 Gene family
GSVIVT01037894001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
MA_10436527g0010 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
MA_3158g0010 No alias No description available 0.02 Gene family
Solyc07g008730.2.1 Solyc07g008730.2 20.1 stress.biotic Homeodomain protein (PRHA).... 0.02 Gene family
Zm00001d010758 GRMZM2G136369 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Zm00001d015265 GRMZM2G033138 20.1 stress.biotic Homeodomain protein (PRHA).... 0.07 Gene family
Zm00001d043452 GRMZM2G314546 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 246 301
IPR001356 Homeobox_dom 622 662
No external refs found!