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  5. MA_10431596g0010

MA_10431596g0010 (ATRABE1C, ATRAB8A,...)


Aliases : ATRABE1C, ATRAB8A, ARA-3, RAB8A, ARA3

Description : E-class RAB GTPase


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10431596g0010

Target Alias Description ECC score Gene Family Method Actions
Als_g20067 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21954 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0125.g048540 ATRABE1C,... E-class RAB GTPase & original description: CDS=167-790 0.03 OrthoFinder output from all 47 species
Cre15.g641800 ATRABE1D,... GTP-binding protein yptV2 OS=Volvox carteri 0.02 OrthoFinder output from all 47 species
Gb_38643 ATRABE1C,... E-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Len_g58486 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g20100.1 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Msp_g05932 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04662 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04365 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 65 222
No external refs found!